Schedule¶
Monday (23 November 2020)¶
DNA methylation with Illumina 450K arrays and Bisulfite-seq
09.15 - 09.30 Welcome (online session) (Olga, Agata)
09.30 - 09.45 Introduction to methylation (online session) (Vincent)
09.45 - 10.15 Computer exercises set-up (online support)
10.15 - 10.30 Methylation Exercises Overview I: Array workflow (online session) (Vincent)
10.30 - 12.00 Exercises (online support)
12.00 - 13.00 lunch (offline)
13.00 - 13.30 Exercises (online support)
13.30 - 15.00 Methylation methods & technologies (online session) (Jessica)
15.00 - 15.15 Methylation Exercises Overview II: Methylation Sequencing (online session) (Vincent)
15.15 - 17.00 Exercises (online support)
17.00 - 17.30 Test yourself (offline)
Tuesday (24 November 2020)¶
ChIP-seq and ATAC-seq data processing and analysis principles
09.15 - 10.00 Recap of the previous day (online group session)
10.00 - 11.30 Introduction to ChIPseq & ATACseq (Agata) (online session)
11.30 - 13.00 lunch (offline)
13.00 - 13.30 Calling broad peaks, differential analysis , Motif analysis (online session) (Agata, Olga, Jakub)
13.30 - 15.30 Exercises (online support)
15.30 - 17.00 Exercises (offline)
17.00 - 17.30 Test yourself (offline)
Wednesday (25 November 2020)¶
New methods and quantitative ChIP-seq
09.15 - 10.30 Recap of the previous day (online group session)
10.30 - 11.30 Quantitative ChIP-seq methods (online session) (Simon)
11.30 - 13.00 lunch (offline)
13.00 - 14.30 Exercises (online support)
14.30 - 15.00 ChIP-seq alternatives - ChIC, CUT&RUN, CUT&TAG (online session) (Simon)
15.00 - 16.00 Exercises (online support)
16.00 - 17.00 Exercises (offline)
17.00 - 17.30 Test yourself (offline)
Thursday (26 November 2020)¶
Nf-core pipelines: Methylseq, Chipseq, Atacseq
09.15 - 10.00 Recap of the previous day (online group session)
10:00 - 10:40 Introduction to Nextflow (online session) (Phil)
10:40 - 11.30 Exercises (online support)
11.30 - 13.00 lunch (offline)
13:00 - 13:45 Introduction to the ChIP-seq and ATAC-seq pipelines (online session) (Harshil)
13.45 - 15.30 Exercises (online support)
15.30 - 17.00 Exercises (offline)
17.00 - 17.30 Test yourself (offline)
Friday (27 November 2020)¶
Integrative and single cell omics
09.15 - 10.00 Recap of the previous day (online group session)
10.00 - 10.45 Single cell methods (Jakub) (online session)
10.45 - 11.00 Break
11.00 - 11.45 Data integration (Jakub) (online session)
11.45 - 13.00 lunch (offline)
13.00 - 13.05 Introduction to exercises (online session)
13.05 - 14.30 Exercises (online support)
14.30 - 15.00 Test yourself (offline)
15.00 - 16.00 Course wrap-up (online session)
anytime feedback survey